Initial release

La créature inconnue .py

@@ -0,0 +1,162 @@
+input = """CCCGC
+ACCCA
+TATAC
+GAGGC
+TGTAA"""
+sequences = ("AT","TAC","CG")
+creatures = """Limaçon de Folfanga	5 	3 	2
+Porc Taudanzain vert	6 	2 	5"""
+
+input = """CGTCGGCGCACCCGAAATCGGAGGTTCGCTAGCGAGGTTCTCACAGTCAGAACTTTTCTTCTTATGGGTAGTATGATCAG
+AAGGCAACTAGGTCTATTCTCGTATGCTCCCATTCATAAATTGGATTATAATACAAACTACGCGAGCATGGGATGACTAT
+GAGATCGAGTCTGTGAAAGTTAAGGGCGGTTAAGACTACAACGGTTATAGGTGCAATATCGTCAAGGCGAAGCCTCGTTA
+TTTGTTCTCCGATCGTCTTGTGGTCTACTAGCAATGTAAACCCCGATCACGCAACGGGTCCTACGCCCCTACGCTGGACG
+ATGATTAAATTCACCGAATGTTTAACCACGCTGTTGAAGGCACATCGTATGAACTGTGGACAAGGGCTAGTTGCCCGGGG
+GGTACATTCGTAGGCCATATGCCGACAAAAATGCTCATAACAAACACAGCGCGCTGGGTAGAGATCTGGAGTACATTAAT
+GTGAGTACTTTGATGGGAGCGACTCACGACTATACGTGTCGCGTCGTGATCGGAAACTACTCAGCGGTCTATCTATTTGC
+GTAGTAAAATCAAGGGGCAAAAACTCTAATAGTTGAACAAGGTGCGGATCCACATATTCTAGCTCATCCCATGTATCGTA
+TAAAGCAAACACACCCGGACTGCTTCGATCAGTAATACCGACAACCGCATGCTGTCTAACAAACCCGATAGTAACGGAAT
+GTCGCTCCCAAGATGTATAGAACTAAGCTGCACCACAGGTCTGATACATTTTTTGCCGGCGATAAGAAATTACCGGCAGT
+TGGCGAATTTAGTGTCCGGGGTAGCATAAAGTGGGAATGTCGCTAGATTGAATGTACGCAACTAATTCGGGAGGTAGATG
+CATATGTGGGAGGCGGGTCAGCAGCTGCAATTGGTAAGTCCCGTTTTACAGGACTGTACGAACACGTCCTACCATGATCG
+TCGTATCTACTGCGGAGAGCGTTGATTTTGGGGCGTACGAGACGAATCCCCACCAAAGTAGGAGATGTCGAGCTCGCATG
+GAGAGGATCGTGATTACCGTAGCATTGGCTGTTAGGAGCGTTGAAAGGTTGTTTATTGCATTTAAGCGGTAAGCCATCGA
+GCGAGTGGATACGTCGGAGGCGTATGCCGCACGCCTATAGAGGGGCAAGGGTGACCATTCAAAGTACTCTAGTTGTTATG
+TTCTATCGATATCATCGACTGCATCTGTGTACGGGGACGCGGCACTACCTAGGGGTTTCGAGGACTTGTGCCGCTATCCG
+TGCGGGCCGAATCATTGCGATATTGCTGCATTGTATTATGGCACGCACTCGTTAACCATGACCCACGCGATTAGTGTGGG
+GTTGATGCGACGAAAAGAGCTATAGACTAGTTCGAGAAGCGCAAAGATTATGCCGTTCACGCAGCCAAGAAACGTTCCGG
+AGTTTCCTGACGTCGTCACTAGGAAGCCCTATTGGGACACCGGCTCTGTTCCTCGCACCTCATAGGAGTCCGCGCAACTT
+TCCGCACTAGCACCCTTAATTCGTCACCGTTCCGCTACCTGTTCGAATCTGGAGACCTATCTGGTGGAACGCGGTAGGTG
+GAGTTTTATTCCGGCGTTCCCGAGTCGCTCCGTGGATTAATTGTCTGCCTGTATTATGTCTATAGCCTGGCCCTGAAAGC
+GGCTACCTTAGGCTCCTGCTATAAATCACTGTGATTTTAAACCCCTCGGGCAATTTTACTGTACAGCTAACGGGATCCTT
+TCCGTAATCTAGCCGTAGTACTCAAGTGAAGTGCTAAGGTATTTGAGTTTCTGGTCGAAGGCGCTTTGGCACTACAATTG
+CTCTAACGAACCGGACTGTCATGAGCTTCCCCGGACCCTTGACGATCATTCTTGGGGCTGGGTGGTTAGACAGCCTTATC
+GGGCTTGACCCTCTGACCATTAGTAGATATACTCTGACCTTGAGGATATACGTTGTCCCGCACCTCAAAGGGGGATATTG
+GAAATCCCATCCCTTCCAATAAAACGAGCGCACGCCCGTATATAGTACCAACCTTACCAGTCACATATGATGTTTATGGG
+ATTAACGCAGGTGACCGCAGGCAAAATAAGGAAATGCACGATTGGTTTGAAGCCGCGATAAGTCGCTGACAGTATAGTGG
+TCGTTACTTACACTTCTCGACTCGTAGAAAGGCCAAGGCCTCTCTACGAAGTAAAGCAGACTCGAACATGGAAACTCACG
+AGGATCCAGGCGAAGCTGATGTTGACTACAAACGCTGCCGAATGGCTAGTTATGTCTGTGAGCCTACTACTGCTGGAGTG
+GACGCCTAATTTGAGTTGGCGTTAAGGCCGTATGGGCAGATAGGGGGGAGAGGCCTACGACGGGTAAGTGATGAAGGTCG
+CATCGGTGCGCTTGGACATAGCCCAAGCCGCGAGGATTAGCGTGGTTACTAACGCGATACAGTTACTTTAGTGAAGTTTG
+TAGGATTGTGAGCTTTCCTCAAGGGGCCGATCCGTAAATTAAGCGGAATATGGAGATTCACTCGTATGTGGAATGATGCG
+CCAGGTCGACGTATGTTGATTTAATGTACTATCGGGATAACTGGACGCATACCGCCGACTCAGTGCGGTTGTGCCTTGGG
+CGTCGCCCCCCTGCTTCTGTAGGGTCATGACGCTCCGACATCTGCTGGGCTCTCTAACCGAGACGGGCTCTATGCAAGGT
+TTCCGTAAAGGGGGAGTGAAGGTATATACCGAAGCTAATTGAAACCAGGAGGACGACGGTAAAATCCCAGCCAGGACTCT
+GGACGCTATTGGGTCTAGGCAAGCATACCGAGAACGCCCGATAGGTTACTCACGTTGTGACGATACGATTGCGGTGGAAC
+GTACCAATCTTAAAGGCGTACTGTGGTTAAAGCCTGTGACGGTATCATGGCACAATTTGTCAAGCTGCGCAACACGTCTG
+AGGGACAGCCGCCTTCCTGAACCACGTCGTGCCTACGCTGTACGCGCTGGGGTACGGTCACTAGGCTCGGCACGGTAAAT
+GTCGAGCGCAATACGCGGAACGGCAGGATCAACCATTACCGTGTAGCTGATACTCTGTGTGTTATCTCTACATTCTGATG
+TTTCATTTTAGAGCTTAGGTGCATCCATCTTTGAACCCAGCTAACCGGCGGTGTCCGTTCACCCTAATGGCGCTGAACCT
+CCGGTCCGGGTTTATCAAGGAAAAATCCGAACTCGTATGCATCGCGCGTCGTCACAAAGTTCTTTGAGATGCTTCAAGGT
+TTGATCCTTGGGCGATTTACTGGCTTTACACTATCGACGGAATTATCCCAACCGGACTTATGTATACATTTCTTACACAG
+CTCGTTTCGGCCAGACCCCGTTTCGTATAGCTAATGTTACGATATTTTCCTATGGGGACGATGACGCAATTAAGGAAAAA
+GCATGATGCTAGATAGCACCCCCACGTAGGAAACTGTAGGATACAGGTCTGTAGCCGCACAAAGAAACCATCTTACAACT
+ACAACAGGGGCAGCCTGTCAAGATGGTCAGCACGTTATTACTTTGGCCCGTGCCGCGAGCAATATAAAGTATTAGGTGCG
+ACATAGTAAGAGCTTTCAGTTGCAGATAGTTGTCGGGGAGCCCGGTGAGTGTAACTCGTAGTGATGGCTCAGTTCGACCC
+ACATTGGAAACTCGGTTAGTACAAATCACTTGGATTTCGCCTGAGGACCGTACAATGCCTGCCACCTAAACAGTCATGGA
+GCTCAGGATCACCTATAGGGTGACATGTTGTCAACGCGCCAATGACAGGAGGGGATCTCTGAACTTCGCGCCAATCAGCT
+TATAAACTACTATCTTCCGATAGCACCATCCAGAGACTTCCGCGTATGAGAGAACAACTGCCATTGTCCCTAAGGGACTG
+GCCGCATAAGAAGGACCCCATTGTAACTCAACGTAAGTGTTCGACGGCTTGCATTTCTTGATTAGATCGAGCACGTCCCG
+TCGGGACTGTATTTGTATTGCTCCTAGTAGAACACGCATGGCAGCACTATGTTCTTTCACCCCATCGTTCGGTGATCGGA
+TTATACCCAACGATATCTATTTGACATTACATTCGTAACCTATAACTTCCTTTGCAGTGCTTTGCCTTTGCGAGTACGAA
+ACTCGGCACATTTGGCAGCCTACAGACAAACCGACCTGGAGTTTCTCGACAGGCGCTAAACTTGTTTGGTGGCAGTGCGC
+AGCGCTCCGTACCACCACGCGTCGGATTGATCCGGGCCAATGTCATGGCCGGGGCTGATACTTCGTTAGCGTGTAAGAAC
+AGGCGCTCCTGAAGTACCTACGATACGTTCACGCATGCAAACGAGCCCTTAGAGCCTGCCCGACGTCCGTTAATATGGCG
+AGCAGAAGGCATAAATGCTGTTAATCAAGCTTCCTGTACTCCCGCTTATTTACTACTGTGCCAAGTGGAGTTAATGTTGA
+GACAAGGACTTGCTTGGTGACCCAGCGGGCTACAACATCCTGAACTTGCCCATGGGTCCGGAGTGTTTCTAGGGGACAAG
+GGTTAACAGTATTACCGTGATATTTTCTAACCACGTCAGCCCAATTTAATTCGAAACATGTCGAGTGTCCACTTATGGGC
+TACCAAGCTCTAGCGAGTGTAATCTCCGCCTAATGCTCCCCCTAGGAACGTCAGAACGGGACGCGCGTTGCGTACAGAGA
+GTTCTGAAATCGGCACTATAAGTGATTAACTGGGTACCGGTCGTTCAGCATCAGAAGCGTCCATTAACCGTGAGCGCGGA
+AGATACTGCAGGCTTCATCTCCTCGAGTAATTTTGATGTATGGCATGAATATATACCGTGCATGTGGTTGCTGGCATGAC
+CCTGAAAGTCAGAGACTAGTTCCCAGGCCTCGTCAGCTCCTCCCGAGCGCTCACGTCACGTTGATTAATGTCTGCTTGGG
+TGGTCTGCCCGTAGCCAGAACTTGGTCGGTATTCCGCACGCACTAAGGCGTGTCATAGAAGCGTCCCTGCTCACCGCGGC
+GCAAGGTGAGCGTACATCTTGCCAGGACACAGGTACGGAGAATCCTATCGGGAAGGAGGCCATAACAGTGAGTACAGGTT
+CTTAACCCAAACATTCCCTTGGCGGACTACAGAGTAAGACCGGCAACAGCTAAACGAGATTGCCTAGACTTAACATACTC
+AGTGATAGTACTCTCCAGGATTTGCCCCGTTAGCAAGTTCGACAAGCTGCGAGCGGATCTCATAGATATCACGACGGGCT
+TCTCAATCGTCGTCTAACCAAAGCTACCTATTCGTTCCCCGGGCGACTAGGTTTCTGGGGCCCGGTATGGTAAATTTGTA
+TTCGTTATGGCTTTGGGGAGTAAGCACCTAAAAACTGACCTCAGGCCTGTAAATATTCGTAACCCAACACCGCTGGTCTG
+TGAGGCGAAAGGTCGCCGGCGCTGCTTGTCGAAGTGGTAACTTGGCTTCTTGCATGACCCATGGATATTTCATAAAGGGA
+AGGCTCGACACAATCGCACATCTGACAGAGTAGACTGATTGGTCCGTCGCGTTGTGAGAATTGGTCCAGTAAGCCCAAGT
+CTTATACGTCCGTAGTTGATGCGGTGGAACCCATTGAGAGACGAGAATCCCTGGTGATCAAGGCAAGGTGTACCACATCA
+AGTAATCCCGTAAAGGTCCTTGCCCTACAGTGAATTTGCCAGCCAGTCTCGGGATTACCATATAACCTCCGTATCCGATC
+TTATGGAAACTGGGAGAAGGTAGACCGTGGTAACTACCTAGAAGTCGCAGTCACGGAGTACCCCGTGACATCCATATGGG
+ACTTAGGCCGCACTATAACGGCCAGCCATTCAAAGGAGTATTTAGTCACCCGCATCTGATCGGACGTAGTGTCTTCAGCG
+CTACGCCTTGTTCGCAAACATTGCTAAGGTGTCCTACTCTCCCCGGATAACCAAAGGAGAGGCCAGATAAGCTTCATCTG
+CCGCAAGAACAAGCGCGAACTCAGTCCCGCTGGTTATGGGGTCACTTGCTCTTCACTCCCCCTCCAGGGGGGAACTCGTA
+TTGGCCGATCGGGATTGGAGTAGAGGTGATTCAAGGTAAACCGACATTTCGTGCGACTCTATGGAGTATACAGAAATTAC
+TGGACTCGGAGAGGCCCTAGCGACCCGAACCGATATAGCAAGGATTAAGGCTTTCAGCAGTTACGTTTCCCATTCGATAC
+GCGACTCGATGGCCGAGTAAAGACACAGAGAATTCCGGGTAAACTTAATCTGCATGTTGATCCAATCTACTCTCCGACGT
+CCTCGAGAAGTACTGGAAGGCTCCCTGAGATAAACACACGCAACTTGTCCTCACTAAATGTGCAACAACTGTGAAAAAAG"""
+sequences = ("AGTCA","TGCA","AAGCT","AGTC","AGTGG")
+creatures = """Andorien	31 	100 	36 	97 	20
+Bétazoïde	36 	102 	32 	91 	21
+Kazon	38 	106 	35 	90 	29
+Cardassien	36 	107 	32 	97 	24
+Tellarite	30 	102 	33 	98 	27
+Ocampa	31 	108 	31 	91 	25
+Trill	32 	103 	32 	91 	25
+Rémien	35 	100 	36 	97 	26
+Ferengi	31 	108 	38 	97 	22
+Denobulan	37 	109 	36 	92 	25
+Anticanien	33 	109 	36 	98 	28
+Ligonien	39 	100 	30 	91 	22
+Xindis	36 	108 	38 	93 	21
+Talaxien	36 	108 	39 	90 	22
+Suliban	33 	101 	33 	99 	21
+Vorta	36 	104 	35 	97 	29
+Klingon	38 	100 	32 	90 	27
+Dreman	30 	109 	34 	92 	27
+Benzite	33 	104 	37 	90 	27
+Breen	34 	108 	37 	93 	20"""
+
+#reformat input
+table = list()
+lines = input.splitlines()
+for line in lines:
+    order = len(line)
+    table.append(line)
+    table.append(line[::-1])
+for i in range(order):
+    s = ""
+    for line in lines:
+        s = s + line[i]
+    table.append(s)
+    table.append(s[::-1])
+
+sequences = {k:0 for k in sequences}
+creatures_dict = dict()
+for cretature in creatures.splitlines():
+    creat = list(cretature.split("\t"))
+    creature_name = creat[0]
+    creatures_dict[creature_name] = dict()
+    creat.pop(0)
+    for i,seq in enumerate(sequences):
+        creatures_dict[creature_name][seq] = int(creat[i].strip())
+print(creatures_dict)
+print("*******")
+
+for seq in sequences:
+    for item in table:
+        offset = 0
+        while True:
+            pos = item[offset:].find(seq)
+            if pos==-1:
+                break
+            sequences[seq] += 1
+            offset += pos + 1
+print(sequences)
+print("*******")
+
+creature_ressemble = "Rognogno"
+distance_ressemble = 999
+for creature in creatures_dict:
+    distance = 0
+    for seq in creatures_dict[creature]:
+        distance = distance + abs(creatures_dict[creature][seq]-sequences[seq])
+    print(creature, distance)
+    if distance < distance_ressemble:
+        distance_ressemble = distance
+        creature_ressemble = creature
+
+print("*******")
+print("{}:{}".format(distance_ressemble, creature_ressemble))